Imprinted Gene Databases

Homo sapiens: PWCR1

Prader-Willi syndrome chromosome region 1

de los Santos et al. Am J Hum Genet 67: 1067-1082, 2000

Species Gene Aliases Location Status Expressed Allele
Homo sapiens SNORD116 PET1, PWCR1, HBII-85  15q11.2  Imprinted Paternal
Mus musculus Pwcr1 snoRNA MBII-85  7 29.0 cM  Imprinted Paternal
Homo sapiens PWCR1 PET1, non-coding RNA in the Prader-Willi critical region  15q11.2  Imprinted Paternal

Options

  • Reverse Complement:
  • Margin:
  • Show CpG islands: *
    %GC:
    Obs/Exp:
    Length:
  • Show CpG sites:
  • Bisulfite treat:
    Replace C with hyphen:
    Potential primer sites:

Key

  • Non-coding: acgtacgt
  • Exon: AGCTACGT
  • Primer site: acgtacgt
  • CpG island: acgtacgt
  • CpG: **

Export

as FASTA / as RTF (Word)

*CpG island algorithm based on that described in: Takai D and Jones PA. Comprehensive analysis of CpG islands in human chromoseme 21 and 22. PNAS 2002 99(6):3740-5. For more options, visit the CpG Island Searcher.

1      tatattCttT ctttttcatt taatcttact tCcttTAtcg TAtttctttt cgctcttctt     60
61     tcttcctttt aactcctctt ttaactcttc gcaactacta aacttttgtt agtatcagca    120
121    cgtttatcag cacgttagtt attcggcttc gcttGtgtat Cattagtgca tttaggtcta    180
181    gagaactttt aactacCacc cattAtcgtt tccgacacta tgtataaaat ttatactCac    240
241    ctctacgtaa aaacaataag acctcCtctc tCattagtca tacatataaa acatttTact    300
301    ttagtaatac agaagtaggt aagtgtcttt acagttacaa cgtctTctca tttctCaCcc    360
361    CattcctTtC tTtCcttaca tcagcacgct tgcagtattc gtctcCtatt gcaggtacgc    420
421    catCttCgct tcgctCccga tCattttcaa aattcgtcac ttAtcgtttc cgacactatg    480
481    tataaaattt atattCctgc cCattttcgt cacttAtcgt ttccgacact atgtataaaa    540
541    tttatataga attcgtcgta cttAtcgttt ccgacactat gtataaaatt tatattCctg    600
601    taacctccCa ttttcgtcgt acttAtcgtt tccgacacta tgtataaaat ttatatagta    660
661    tttatttatt tttacattca cgcaggcttc attagcttat tcagtttcta ttattctcag    720
721    tttccttatt atttcagttt cttattattG cagtttcGta ttatttctca gtttctctta    780
781    ttattCcagt ttcCtattat tTacagtttc Tatattattc agtttctatt attcagtttc    840
841    tatttatttt tatcacgcag gccccccctt caaaacacta ttctataaac tattatttta    900
901    ccctttacgG ttactTttat cttctttagG ttattacacc CacCttacCa ttagaGatta    960
961    aattagGtta gGctttagat GATttagGtt agGatattta gGttaaatta ttacacCttt   1020
1021   acatagCata gttaaAttat tacCttattt tattatcttC tttacaaCAa ttaccCCtta   1080
1081   ctacCtactt attataTatt attTtttagG ttatTtctat actatatttt atagttaGtt   1140
1141   acttacattt aCaccttatt cttCaacttt atttactgtc aacttttagt gctactcgtg   1200
1201   tatagtagcc cccagcacgt ttatattata ctattatata atttactttt aactatatct   1260
1261   agctcaattc gAtcatcaaa atcgtttaat tcgCaattga attgaatatg ttccccatat   1320
1321   TAATAat                                                             1327